switchChrs: Switch Chromosomes
In grafab/pergola: Toolbox for Polyploid Genetic Data
Description
Usage
Arguments
Value
Examples
Description
Wrapper function to switch chromosomes for the whole map
Usage
1
switchChrs(map, comp)
Arguments
map
Map to switch.
comp
Other map for comparison.
Value
map
Examples
1
2
3
4
5
6
7
8
9
data(simTetra)
simTetrageno <- basesToGenotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)
map <- switchChrs(map, map2)
grafab/pergola documentation built on May 17, 2019, 8:18 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Wrapper function to switch chromosomes for the whole map
Usage
1 | switchChrs(map, comp)
|
Arguments
map |
Map to switch. |
comp |
Other map for comparison. |
Value
map
Examples
1 2 3 4 5 6 7 8 9 | data(simTetra)
simTetrageno <- basesToGenotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)
map <- switchChrs(map, map2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.