calcRec: Recombination frequencies computation

In grafab/pergola: Toolbox for Polyploid Genetic Data

Description

Calculate recombination frequencies for a whole matrix

Usage

calcRec(input, ploidy, sparse = FALSE, ...)

Arguments

input	Matrix of genotypes. Rows represent markers. Columns represent samples.
ploidy	Ploidy level of the organism.
sparse	Logical, if the matrix is a sparse matrix or not.
...	arguments are forwarded to pairwRF.

Value

Matrix of pairwise recombination frequencies.

Examples

data(simTetra)
simTetraGen <- basesToGenotypes(simTetra, ploidy = 4)
calcRec(simTetraGen, 4)

grafab/pergola documentation built on May 17, 2019, 8:18 a.m.