swapChrs: Swap chromosomes
In grafab/pergola: Toolbox for Polyploid Genetic Data
Description
Usage
Arguments
Value
Examples
Description
Finds best matching chromosome for each chromosome and brings them into the same order.
Usage
1
swapChrs(map, comp)
Arguments
map
Map to switch.
comp
Other map for comparison.
Value
map
Examples
1
2
3
4
5
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7
8
9
data(simTetra)
simTetrageno <- basesToGenotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)
map <- swapChrs(map, map2)
grafab/pergola documentation built on May 17, 2019, 8:18 a.m.
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Description Usage Arguments Value Examples
Description
Finds best matching chromosome for each chromosome and brings them into the same order.
Usage
1 | swapChrs(map, comp)
|
Arguments
map |
Map to switch. |
comp |
Other map for comparison. |
Value
map
Examples
1 2 3 4 5 6 7 8 9 | data(simTetra)
simTetrageno <- basesToGenotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)
map <- swapChrs(map, map2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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