API for hxia/plp-git-demo
Package for patient level prediction using data in the OMOP Common Data Model
| Global functions | |
|---|---|
| .onLoad | Source code |
| MapCovariates | Source code |
| PatientLevelPrediction | Man page |
| accuracy | Man page Source code |
| addAgeTemp | Source code |
| addNonAgeTemp | Source code |
| applyEnsembleModel | Man page Source code |
| applyModel | Man page Source code |
| applyTidyCovariateData | Source code |
| aucWithCi | Source code |
| aucWithoutCi | Source code |
| averagePrecision | Man page Source code |
| brierScore | Man page Source code |
| buildVae | Source code |
| byMax | Source code |
| bySum | Source code |
| calculatePrevs | Source code |
| calibrationInLarge | Source code |
| calibrationLine | Man page Source code |
| calibrationWeak | Source code |
| characterize | Source code |
| checkBoolean | Source code |
| checkHigher | Source code |
| checkHigherEqual | Source code |
| checkInStringVector | Source code |
| checkIsClass | Source code |
| checkLower | Source code |
| checkLowerEqual | Source code |
| checkNotNull | Source code |
| checkPlpInstallation | Man page Source code |
| clearLoggerType | Source code |
| combinePlpModelSettings | Man page Source code |
| computeAuc | Man page Source code |
| computeAucFromDataFrames | Man page Source code |
| configurePython | Man page Source code |
| covariateSummary | Source code |
| createEnsembleNetwork | Source code |
| createLearningCurve | Man page Source code |
| createLearningCurvePar | Man page Source code |
| createLrSql | Man page Source code |
| createPlpJournalDocument | Man page Source code |
| createPlpModelSettings | Man page Source code |
| createPlpReferenceTable | Source code |
| createPlpReport | Man page Source code |
| createStudyPopulation | Man page Source code |
| createStudyPopulationSettings | Man page Source code |
| createTempModelLoc | Source code |
| createTransform | Source code |
| custom_loss | Source code |
| diagnostic | Man page Source code |
| diagnosticOddsRatio | Man page Source code |
| drawAttritionDiagramPlp | Man page Source code |
| ensure_installed | Source code |
| evaluateMultiplePlp | Man page Source code |
| evaluatePlp | Man page Source code |
| externalValidatePlp | Man page Source code |
| f1Score | Man page Source code |
| falseDiscoveryRate | Man page Source code |
| falseNegativeRate | Man page Source code |
| falseOmissionRate | Man page Source code |
| falsePositiveRate | Man page Source code |
| fitAdaBoost | Source code |
| fitCIReNN | Source code |
| fitCNNTorch | Source code |
| fitCovNN | Source code |
| fitCovNN2 | Source code |
| fitCoxModel | Source code |
| fitDecisionTree | Source code |
| fitDeepNN | Source code |
| fitGBMSurvival | Source code |
| fitGLMModel | Man page Source code |
| fitGradientBoostingMachine | Source code |
| fitKNN | Source code |
| fitLRTorch | Source code |
| fitLassoLogisticRegression | Source code |
| fitMLP | Source code |
| fitMLPTorch | Source code |
| fitNaiveBayes | Source code |
| fitPlp | Man page Source code |
| fitRNNTorch | Source code |
| fitRandomForest | Source code |
| fitRandomForestQuantileRegressor | Source code |
| fitSVM | Source code |
| fitSagemaker | Source code |
| formatCovariateSettings | Source code |
| formatDocNumbers | Source code |
| gbm_model2 | Source code |
| getAnalysisId | Source code |
| getAttritionTable | Man page Source code |
| getCV | Source code |
| getCalibration | Man page Source code |
| getCohortNames | Source code |
| getCounts | Source code |
| getCounts2 | Source code |
| getDemographicSummary | Source code |
| getDistribution | Source code |
| getOs | Source code |
| getPlpData | Man page Source code |
| getPlpTable | Man page Source code |
| getPredictionCovariateData | Source code |
| getPredictionDistribution | Man page Source code |
| getProportions | Source code |
| getQuantiles | Source code |
| getSurvival | Source code |
| getThresholdSummary | Man page Source code |
| interpretInstallCode | Man page Source code |
| launchDiagnosticsExplorer | Man page Source code |
| layer_concrete_dropout | Source code |
| layer_custom | Source code |
| lcWrapper | Source code |
| limitCovariatesToPopulation | Source code |
| listAppend | Man page Source code |
| loadEnsemblePlpModel | Man page Source code |
| loadEnsemblePlpResult | Man page Source code |
| loadPlpData | Man page Source code |
| loadPlpFromCsv | Man page Source code |
| loadPlpModel | Man page Source code |
| loadPlpResult | Man page Source code |
| loadPrediction | Man page Source code |
| loadPredictionAnalysisList | Man page Source code |
| modelTypeToCyclopsModelType | Source code |
| moveHdModel | Source code |
| negativeLikelihoodRatio | Man page Source code |
| negativePredictiveValue | Man page Source code |
| nrow | Source code |
| nrow.tbl | Source code |
| outcomeSurvivalPlot | Man page Source code |
| permute | Source code |
| permutePerf | Source code |
| personSplitter | Man page Source code |
| pfi | Source code |
| plotDemographicSummary | Man page Source code |
| plotF1Measure | Man page Source code |
| plotGeneralizability | Man page Source code |
| plotLearningCurve | Man page Source code |
| plotPlp | Man page Source code |
| plotPlpProblem | Source code |
| plotPrecisionRecall | Man page Source code |
| plotPredictedPDF | Man page Source code |
| plotPredictionDistribution | Man page Source code |
| plotPreferencePDF | Man page Source code |
| plotRoc | Man page Source code |
| plotSmoothCalibration | Man page Source code |
| plotSparseCalibration | Man page Source code |
| plotSparseCalibration2 | Man page Source code |
| plotSparseRoc | Man page Source code |
| plotVariableScatterplot | Man page Source code |
| plpDataSimulationProfile | Man page |
| positiveLikelihoodRatio | Man page Source code |
| positivePredictiveValue | Man page Source code |
| predict.BayesianDeep | Source code |
| predict.deep | Source code |
| predict.deepEnsemble | Source code |
| predict.deepMulti | Source code |
| predict.knn | Source code |
| predict.plp | Source code |
| predict.pythonAuto | Source code |
| predict.pythonGarden | Source code |
| predict.pythonReticulate | Source code |
| predict.pythonSurvival | Source code |
| predict.sagemaker | Source code |
| predict.xgboost | Source code |
| predictAndromeda | Man page Source code |
| predictPlp | Man page Source code |
| predictProbabilities | Man page Source code |
| print.plpData | Source code |
| print.summary.plpData | Source code |
| processDistribution | Source code |
| randomSplitter | Man page Source code |
| reformatCovariateSettings | Source code |
| reformatPerformance | Source code |
| registerParallelBackend | Man page Source code |
| registerSequentialBackend | Man page Source code |
| runEnsembleModel | Man page Source code |
| runPlp | Man page Source code |
| runPlpAnalyses | Man page Source code |
| runPlpE | Source code |
| saveEnsemblePlpModel | Man page Source code |
| saveEnsemblePlpResult | Man page Source code |
| savePlpData | Man page Source code |
| savePlpModel | Man page Source code |
| savePlpResult | Man page Source code |
| savePlpToCsv | Man page Source code |
| savePrediction | Man page Source code |
| savePredictionAnalysisList | Man page Source code |
| sensitivity | Man page Source code |
| setAdaBoost | Man page Source code |
| setCIReNN | Man page Source code |
| setCNNTorch | Man page Source code |
| setCovNN | Man page Source code |
| setCovNN2 | Man page Source code |
| setCoxModel | Man page Source code |
| setDecisionTree | Man page Source code |
| setDeepNN | Man page Source code |
| setGBMSurvival | Man page Source code |
| setGradientBoostingMachine | Man page Source code |
| setKNN | Man page Source code |
| setLRTorch | Man page Source code |
| setLassoLogisticRegression | Man page Source code |
| setMLP | Man page Source code |
| setMLPTorch | Man page Source code |
| setNaiveBayes | Man page Source code |
| setPythonEnvironment | Man page Source code |
| setRNNTorch | Man page Source code |
| setRandomForest | Man page Source code |
| setRandomForestQuantileRegressor | Man page Source code |
| setSVM | Man page Source code |
| setSagemakerBinary | Man page Source code |
| setup_parallel | Source code |
| similarPlpData | Man page Source code |
| simulatePlpData | Man page Source code |
| specificity | Man page Source code |
| subjectSplitter | Man page Source code |
| summariseVal | Source code |
| summary.plpData | Source code |
| summary.runPlp | Source code |
| textPlpAnalysis | Source code |
| timeSplitter | Man page Source code |
| toSparseM | Man page Source code |
| toSparseTorchPython | Man page Source code |
| trainAdaBoost | Source code |
| trainCIReNN | Source code |
| trainCNNTorch | Source code |
| trainCovNN | Source code |
| trainCovNN2 | Source code |
| trainDecisionTree | Source code |
| trainDeepNN | Source code |
| trainGBMSurvival | Source code |
| trainLRTorch | Source code |
| trainMLP | Source code |
| trainMLPTorch | Source code |
| trainRNNTorch | Source code |
| trainRandomForestQuantileRegressor | Source code |
| trainSVM | Source code |
| transferLearning | Man page Source code |
| transportModel | Man page Source code |
| transportPlp | Man page Source code |
| updateModelLocation | Source code |
| viewMultiplePlp | Man page Source code |
| viewPlp | Man page Source code |
| viewPlps | Source code |
