DESeq2DS: Differential expression analysis on the server-side
In isglobal-brge/dsOmics: DataSHIELD server site Omic functions
DESeq2DS R Documentation
Differential expression analysis on the server-side
Description
Performs the DGE based on
the Negative Binomial distribution
Usage
DESeq2DS(vars, set, test, fitType, sfType, reduced, contrast)
Arguments
vars
variables for the model
set
SummarizedExperiment object
test
"Wald" or "LRT"
fitType
"parametric", "local", or "mean"
sfType
"ratio", "poscounts", or "iterate"
reduced
test="LRT"
contrast
model matrix contrast
Details
This function perform a DGE analysis
for SummarizedExperiment input
Author(s)
L. Abarrategui for DataSHILED development team
isglobal-brge/dsOmics documentation built on Nov. 6, 2024, 1:28 a.m.
R Package Documentation
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| DESeq2DS | R Documentation |
Differential expression analysis on the server-side
Description
Performs the DGE based on the Negative Binomial distribution
Usage
DESeq2DS(vars, set, test, fitType, sfType, reduced, contrast)
Arguments
vars |
variables for the model |
set |
|
test |
"Wald" or "LRT" |
fitType |
"parametric", "local", or "mean" |
sfType |
"ratio", "poscounts", or "iterate" |
reduced |
test="LRT" |
contrast |
model matrix contrast |
Details
This function perform a DGE analysis
for SummarizedExperiment input
Author(s)
L. Abarrategui for DataSHILED development team
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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