addPhenoDataDS: Add Phenotype data to ExpressionSet

In isglobal-brge/dsOmics: DataSHIELD server site Omic functions

Add Phenotype data to ExpressionSet

Description

Add Phenotype data to ExpressionSet

Usage

addPhenoDataDS(x, pheno, identifier, alternate_eset_id, complete_cases)

Arguments

x	ExpressionSet ExpressionSet to which add phenotype information
pheno	data.frame Table with the new phenotypes
identifier	character Name of the ID column on the phenotypes data.frame
alternate_eset_id	character Alternate ID of the eSet pheno data, by default the rownames of the eSet pheno data act as ID, use this argument if the ID to merge the individuals is on a column of the pheno data. Input NULL for the standard behaviour of using the rownames of the pheno data as ID.
complete_cases	bool If TRUE only the matching individuals between the ExpressionSet and the phenotypes table will be included on the resulting ExpressionSet. If FALSE all the individuals on the input ExpressionSet will be on the output ExpressionSet

isglobal-brge/dsOmics documentation built on March 22, 2023, 4:01 a.m.