EGAhtsgetResourceClient: EGA htsget resource client

In isglobal-brge/dsOmics: DataSHIELD server site Omic functions

EGA htsget resource client

Description

Build a GDS handler from a resource object describing access to a EGA valid credentials, pointing to a VCF or BAM file to be converted into a GDS file.

Format

A R6 object of class EGAhtsgetResourceClient

Super classes

resourcer::ResourceClient -> resourcer::FileResourceClient -> EGAhtsgetResourceClient

Methods

Public methods

• EGAhtsgetResourceClient$new()

• EGAhtsgetResourceClient$getConnection()

• EGAhtsgetResourceClient$getValue()

• EGAhtsgetResourceClient$close()

• EGAhtsgetResourceClient$clone()

Inherited methods

• resourcer::ResourceClient$asDataFrame()
• resourcer::ResourceClient$asTbl()
• resourcer::ResourceClient$exec()
• resourcer::ResourceClient$getResource()
• resourcer::FileResourceClient$downloadFile()

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Method new()

Usage

EGAhtsgetResourceClient$new(resource)

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Method getConnection()

Usage

EGAhtsgetResourceClient$getConnection()

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Method getValue()

Usage

EGAhtsgetResourceClient$getValue()

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Method close()

Usage

EGAhtsgetResourceClient$close()

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Method clone()

The objects of this class are cloneable with this method.

Usage

EGAhtsgetResourceClient$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

isglobal-brge/dsOmics documentation built on Nov. 6, 2024, 1:28 a.m.