EGAhtsgetResourceClient: EGA htsget resource client

In isglobal-brge/dsOmics: DataSHIELD server site Omic functions

EGA htsget resource client

Description

Build a GDS handler from a resource object describing access to a EGA valid credentials, pointing to a VCF or BAM file to be converted into a GDS file.

Format

A R6 object of class EGAhtsgetResourceClient

Super classes

resourcer::ResourceClient -> resourcer::FileResourceClient -> EGAhtsgetResourceClient

Methods

Public methods

• EGAhtsgetResourceClient$new()

• EGAhtsgetResourceClient$getConnection()

• EGAhtsgetResourceClient$getValue()

• EGAhtsgetResourceClient$close()

• EGAhtsgetResourceClient$clone()

Inherited methods

• resourcer::ResourceClient$asDataFrame()
• resourcer::ResourceClient$asTbl()
• resourcer::ResourceClient$exec()
• resourcer::ResourceClient$getResource()
• resourcer::FileResourceClient$downloadFile()

---

Method new()

Usage

EGAhtsgetResourceClient$new(resource)

---

Method getConnection()

Usage

EGAhtsgetResourceClient$getConnection()

---

Method getValue()

Usage

EGAhtsgetResourceClient$getValue()

---

Method close()

Usage

EGAhtsgetResourceClient$close()

---

Method clone()

The objects of this class are cloneable with this method.

Usage

EGAhtsgetResourceClient$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

isglobal-brge/dsOmics documentation built on Nov. 11, 2024, 4:18 a.m.