API for isglobal-brge/dsOmics
DataSHIELD server site Omic functions
| Global functions | |
|---|---|
| .fittedValues_exponential | Man page Source code |
| .fittedValues_linear | Man page Source code |
| .onAttach | Source code |
| .onDetach | Source code |
| .one_hot_encoding | Man page Source code |
| .recodeprs_table | Source code |
| .retrievePGS | Man page Source code |
| BAM2VCF | Man page Source code |
| DESeq2DS | Man page Source code |
| EGAhtsgetResourceClient | Man page |
| EGAhtsgetResourceResolver | Man page |
| GA4GHResourceClient | Man page |
| GA4GHResourceResolver | Man page |
| GDSFileResourceClient | Man page |
| GDSFileResourceResolver | Man page |
| GWASDS | Man page Source code |
| GenotypeDataDS | Man page Source code |
| Laplace_noise_generator | Man page Source code |
| Opal2FileResourceGetter | Man page |
| PCADS | Man page Source code |
| PCASNPSDS | Man page Source code |
| PRSDS | Man page Source code |
| PRSDS_aux | Man page Source code |
| RNAseqPreprocDS | Man page Source code |
| addPhenoDataDS | Man page Source code |
| alleleFrequencyDS | Man page Source code |
| cellCountsDS | Man page Source code |
| createRSEDS | Man page Source code |
| dlaplace | Man page |
| edgeRDS | Man page Source code |
| exactHWEDS | Man page Source code |
| extractPhenoFromGDSDS | Man page Source code |
| fastAlleleFrequencyDS | Man page Source code |
| fastGWAS_ColSums | Man page Source code |
| fastGWAS_PHENO_removeNAindiv | Man page Source code |
| fastGWAS_S | Man page Source code |
| fastGWAS_S_means | Man page Source code |
| fastGWAS_getFitted.values | Man page Source code |
| fastGWAS_getResiduals | Man page Source code |
| featureDataDS | Man page Source code |
| featureNamesDS | Man page Source code |
| fvarLabelsDS | Man page Source code |
| gdsSubset2 | Man page Source code |
| genoDimensionsDS | Man page Source code |
| geno_pca_pooled_addPC2GenoDS | Man page Source code |
| geno_pca_pooled_addPCDS | Man page Source code |
| getChromosomeNamesDS | Man page Source code |
| getSNPSbyGenDS | Man page Source code |
| getVariable | Man page Source code |
| limmaDS | Man page Source code |
| limmaDS2 | Man page Source code |
| lmFeatureDS | Source code |
| make_valid_namesDS | Man page Source code |
| methylation_array_convertDS | Man page Source code |
| nFeaturesDS | Man page Source code |
| nSamplesDS | Man page Source code |
| pDataDS | Man page Source code |
| plinkDS | Man page Source code |
| plotPCADS | Man page Source code |
| plotPCASNPSDS | Man page Source code |
| removeOutliersDS | Man page Source code |
| replace.NA | Source code |
| rlaplace | Man page |
| selFeatureDS | Man page Source code |
| selSNPDS | Man page Source code |
| snptestDS | Man page Source code |
| subsetExpressionSet2DS | Man page Source code |
| subsetExpressionSetDS | Man page Source code |
| subsetGenoDS | Man page Source code |
| svdPartial | Man page Source code |
| varLabelsDS | Man page Source code |
