Files in isglobal-brge/dsOmics

DataSHIELD server site Omic functions

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/BAM2VCF.R R/DESeq2DS.R R/EGAhtsgetResourceClient.R R/EGAhtsgetResourceResolver.R R/GA4GHResourceClient.R R/GA4GHResourceResolver.R R/GDSFileResourceClient.R R/GDSFileResourceResolver.R R/GWASDS.R R/GenotypeDataDS.R R/Opal2FileResourceGetter.R R/PCADS.R R/PCASNPSDS.R R/PRSDS.R R/RNAseqPreprocDS.R R/addPhenoDataDS.R R/alleleFrequencyDS.R R/cellCountsDS.R R/createRSEDS.R R/edgeRDS.R R/exactHWEDS.R R/extractPhenoFromGDSDS.R R/fastAlleleFrequencyDS.R R/fastGWASDS.R R/featureDataDS.R R/featureNamesDS.R R/fvarLabelsDS.R R/gdsSubset.R R/genoDimensionsDS.R R/getChromosomeNamesDS.R R/getSNPSbyGenDS.R R/getVariable.R R/laplaceNoise.R R/limmaDS.R R/limmaDS2.R R/lmFeatureDS.R R/make_valid_namesDS.R R/methylation_array_convertDS.R R/nFeaturesDS.R R/nSamplesDS.R R/one_hot_encoding.R R/pDataDS.R R/plinkDS.R R/plotPCADS.R R/plotPCASNPSDS.R R/removeOutliersDS.R R/selFeatureDS.R R/selSNPDS.R R/snptestDS.R R/subsetExpressionSet2DS.R R/subsetExpressionSetDS.R R/subsetGenoDS.R R/varLabelsDS.R R/zzz.R README.md

data/ethnic_snps.rda

docs/404.html

docs/LICENSE-text.html

docs/articles/geno_exploration.html

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/BAM2VCF.html

docs/reference/DESeq2DS.html

docs/reference/EGAhtsgetResourceClient.html

docs/reference/EGAhtsgetResourceResolver.html

docs/reference/GA4GHResourceClient.html

docs/reference/GA4GHResourceResolver.html

docs/reference/GDSFileResourceClient.html

docs/reference/GDSFileResourceResolver.html

docs/reference/GWASDS.html

docs/reference/GenotypeDataDS.html

docs/reference/Laplace_noise_generator.html

docs/reference/Opal2FileResourceGetter.html

docs/reference/PCADS.html

docs/reference/PCASNPSDS.html

docs/reference/PRSDS.html

docs/reference/PRSDS_aux.html

docs/reference/RNAseqPreprocDS.html

docs/reference/Rplot001.png

docs/reference/addPhenoDataDS.html

docs/reference/alleleFrequencyDS.html

docs/reference/cellCountsDS.html

docs/reference/createRSEDS.html

docs/reference/dlaplace.html

docs/reference/dot-fittedValues_exponential.html

docs/reference/dot-fittedValues_linear.html

docs/reference/dot-retrievePGS.html

docs/reference/edgeRDS.html

docs/reference/exactHWEDS.html

docs/reference/extractPhenoFromGDSDS.html

docs/reference/fastAlleleFrequencyDS.html

docs/reference/fastGWAS_ColSums.html

docs/reference/fastGWAS_PHENO_removeNAindiv.html

docs/reference/fastGWAS_S.html

docs/reference/fastGWAS_S_means.html

docs/reference/fastGWAS_getFitted.values.html

docs/reference/fastGWAS_getResiduals.html

docs/reference/featureDataDS.html

docs/reference/featureNamesDS.html

docs/reference/fvarLabelsDS.html

docs/reference/gdsSubset2.html

docs/reference/genoDimensionsDS.html

docs/reference/geno_pca_pooled_addPC2GenoDS.html

docs/reference/geno_pca_pooled_addPCDS.html

docs/reference/getChromosomeNamesDS.html

docs/reference/getSNPSbyGenDS.html

docs/reference/getVariable.html

docs/reference/index.html

docs/reference/limmaDS.html

docs/reference/make_valid_namesDS.html

docs/reference/nFeaturesDS.html

docs/reference/nSamplesDS.html

docs/reference/plinkDS.html

docs/reference/plotPCADS.html

docs/reference/plotPCASNPSDS.html

docs/reference/removeOutliersDS.html

docs/reference/rlaplace.html

docs/reference/selFeatureDS.html

docs/reference/selSNPDS.html

docs/reference/snptestDS.html

docs/reference/subsetExpressionSetDS.html

docs/reference/subsetGenoDS.html

docs/reference/svdPartial.html

docs/reference/varLabelsDS.html

docs/sitemap.xml

inst/resources/resource.js

man/BAM2VCF.Rd man/DESeq2DS.Rd man/EGAhtsgetResourceClient.Rd man/EGAhtsgetResourceResolver.Rd man/GA4GHResourceClient.Rd man/GA4GHResourceResolver.Rd man/GDSFileResourceClient.Rd man/GDSFileResourceResolver.Rd man/GWASDS.Rd man/GenotypeDataDS.Rd man/Laplace_noise_generator.Rd man/Opal2FileResourceGetter.Rd man/PCADS.Rd man/PCASNPSDS.Rd man/PRSDS.Rd man/PRSDS_aux.Rd man/RNAseqPreprocDS.Rd man/addPhenoDataDS.Rd man/alleleFrequencyDS.Rd man/cellCountsDS.Rd man/createRSEDS.Rd man/dlaplace.Rd man/dot-fittedValues_exponential.Rd man/dot-fittedValues_linear.Rd man/dot-one_hot_encoding.Rd man/dot-retrievePGS.Rd man/edgeRDS.Rd man/exactHWEDS.Rd man/extractPhenoFromGDSDS.Rd man/fastAlleleFrequencyDS.Rd man/fastGWAS_ColSums.Rd man/fastGWAS_PHENO_removeNAindiv.Rd man/fastGWAS_S.Rd man/fastGWAS_S_means.Rd man/fastGWAS_getFitted.values.Rd man/fastGWAS_getResiduals.Rd man/featureDataDS.Rd man/featureNamesDS.Rd man/fvarLabelsDS.Rd man/gdsSubset2.Rd man/genoDimensionsDS.Rd man/geno_pca_pooled_addPC2GenoDS.Rd man/geno_pca_pooled_addPCDS.Rd man/getChromosomeNamesDS.Rd man/getSNPSbyGenDS.Rd man/getVariable.Rd man/limmaDS.Rd man/limmaDS2.Rd man/make_valid_namesDS.Rd man/methylation_array_convertDS.Rd man/nFeaturesDS.Rd man/nSamplesDS.Rd man/pDataDS.Rd man/plinkDS.Rd man/plotPCADS.Rd man/plotPCASNPSDS.Rd man/removeOutliersDS.Rd man/rlaplace.Rd man/selFeatureDS.Rd man/selSNPDS.Rd man/snptestDS.Rd man/subsetExpressionSet2DS.Rd man/subsetExpressionSetDS.Rd man/subsetGenoDS.Rd man/svdPartial.Rd man/varLabelsDS.Rd vignettes/geno_exploration.Rmd

vignettes/geno_exploration.nb.html

isglobal-brge/dsOmics documentation built on March 22, 2023, 4:01 a.m.