dot-retrievePGS: Internal function: Get PGS catalog table of polygenic risks
In isglobal-brge/dsOmics: DataSHIELD server site Omic functions
.retrievePGS R Documentation
Internal function: Get PGS catalog table of polygenic risks
Description
Internal function: Get PGS catalog table of polygenic risks
Usage
.retrievePGS(pgs_id)
Arguments
pgs_id
character ID of the PGS catalog to be used to calculate the polygenic risk score.
Polygenic Score ID & Name from https://www.pgscatalog.org/browse/scores/
Value
data.frame with the columns:
- If chr_name and poition are found:
+ start
+ end
+ effect_allele
+ effect_weight
+ weight_type (if present on the catalog)
- If rsID is found:
+ rsID
+ effect_allele
+ effect_weight
+ weight_type (if present on the catalog)
isglobal-brge/dsOmics documentation built on March 22, 2023, 4:01 a.m.
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| .retrievePGS | R Documentation |
Internal function: Get PGS catalog table of polygenic risks
Description
Internal function: Get PGS catalog table of polygenic risks
Usage
.retrievePGS(pgs_id)
Arguments
pgs_id |
|
Value
data.frame with the columns:
- If chr_name and poition are found:
+ start
+ end
+ effect_allele
+ effect_weight
+ weight_type (if present on the catalog)
- If rsID is found:
+ rsID
+ effect_allele
+ effect_weight
+ weight_type (if present on the catalog)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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