PCASNPSDS: Principal Component Analysis (PCA) on SNP genotype data

In isglobal-brge/dsOmics: DataSHIELD server site Omic functions

Principal Component Analysis (PCA) on SNP genotype data

Description

Principal Component Analysis (PCA) on SNP genotype data

Usage

PCASNPSDS(gds, prune, ld.threshold)

Arguments

gds	GDS object
prune	bool TRUE to prune the GDS file using SNPRelate::snpgdsLDpruning
ld.threshold	Threshold for the pruning (see snpgdsLDpruning)

Value

data frame with the IDs and principal component points to be plotted.

isglobal-brge/dsOmics documentation built on March 22, 2023, 4:01 a.m.