fastGWAS_S: Extract Geno iterator and Pheno information from GenotypeData...
In isglobal-brge/dsOmics: DataSHIELD server site Omic functions
fastGWAS_S R Documentation
Extract Geno iterator and Pheno information from GenotypeData GDS containers
Description
Extract Geno iterator and Pheno information from GenotypeData GDS containers
Usage
fastGWAS_S(genoData, type, snpBlock)
Arguments
genoData
GenotypeData / vector of GenotypeData container for storing genotype data
from a GWAS toghether with the metadata associated with the subjects (i.e. phenotypes and/or covariates)
type
character What to extract from the genoData, the GenoBlockIterators [geno]
or the phenotypes [pheno]
snpBlock
numeric Block size for dividing the genotype data, it equals to the
number of SNPs used on each iteration, depending on the servers RAM it may perform faster using lower or greater
block sizes, do some testing to assess it.
Value
PhenoInfoTable or GenotypeBlockIterator
isglobal-brge/dsOmics documentation built on Nov. 11, 2024, 4:18 a.m.
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| fastGWAS_S | R Documentation |
Extract Geno iterator and Pheno information from GenotypeData GDS containers
Description
Extract Geno iterator and Pheno information from GenotypeData GDS containers
Usage
fastGWAS_S(genoData, type, snpBlock)
Arguments
genoData |
|
type |
|
snpBlock |
|
Value
PhenoInfoTable or GenotypeBlockIterator
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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