Files in jasenfinch/metabolyseR

Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data

NEWS.md R/QC.R R/aggregate.R R/all-classes.R R/analysis-accessors.R R/analysisData.R R/correction.R R/correlations.R R/impute.R R/info.R R/join.R R/keep.R R/mds.R R/metabolyse.R R/metabolyseR.R R/modelling-accessors.R R/modelling-plots.R R/modelling.R R/nlda.R R/occupancy.R R/parameters.R R/plotExplanatoryHeatmap.R R/plotFeature.R R/plotLDA.R R/plotOccupancy.R R/plotPCA.R R/plotRSD.R R/plotSupervisedRF.R R/plotTIC.R R/plotUnsupervisedRF.R R/plotting.R R/pre-treatment.R R/predict.R R/randomForest-classification.R R/randomForest-internals.R R/randomForest-permute.R R/randomForest-regression.R R/randomForest-unsupervised.R R/randomForest.R R/reexports.R R/remove.R R/roc.R R/rsd.R R/show-method.R R/split.R R/transform.R R/tune.R R/univariate.R README.Rmd README.md man/Analysis-class.Rd man/AnalysisData-class.Rd man/AnalysisParameters-class.Rd man/QC.Rd man/RandomForest-class.Rd man/Univariate-class.Rd man/aggregate.Rd man/analysis-accessors.Rd man/analysisData.Rd man/analysisElements.Rd man/analysisParameters.Rd man/anova.Rd man/bind.Rd man/changeParameter.Rd man/cls.Rd man/correction.Rd man/correlations.Rd man/correlationsParameters.Rd man/impute.Rd man/io-parameters.Rd man/keep.Rd man/linearRegression.Rd man/mds.Rd man/metabolyse.Rd man/modelling-accessors.Rd man/modelling-parameters.Rd man/occupancy.Rd man/occupancyFilter.Rd man/parameters.Rd man/plotExplanatoryHeatmap.Rd man/plotFeature.Rd man/plotImportance.Rd man/plotLDA.Rd man/plotMDS.Rd man/plotMetrics.Rd man/plotOccupancy.Rd man/plotPCA.Rd man/plotROC.Rd man/plotRSD.Rd man/plotSupervisedRF.Rd man/plotTIC.Rd man/plotUnsupervisedRF.Rd man/pre-treatment-parameters.Rd man/predict.Rd man/randomForest.Rd man/reexports.Rd man/remove.Rd man/roc.Rd man/rsd.Rd man/split.Rd man/transform.Rd man/ttest.Rd man/tune.Rd tests/testthat.R tests/testthat/test-QCMethods.R tests/testthat/test-aggregateMethods.R tests/testthat/test-analysisData.R tests/testthat/test-analysisParameters.R tests/testthat/test-changeParameter.R tests/testthat/test-correctionMethods.R tests/testthat/test-correlations.R tests/testthat/test-impute.R tests/testthat/test-info.R tests/testthat/test-keep.R tests/testthat/test-mds.R tests/testthat/test-metabolyse.R tests/testthat/test-modelling-plots.R tests/testthat/test-occupancyMethods.R tests/testthat/test-parameters.R tests/testthat/test-plotExplanatoryHeatmap.R tests/testthat/test-plotFeature.R tests/testthat/test-plotLDA.R tests/testthat/test-plotOccupancy.R tests/testthat/test-plotPCA.R tests/testthat/test-plotRSD.R tests/testthat/test-plotSupervisedRF.R tests/testthat/test-plotTIC.R tests/testthat/test-plotUnsupervisedRF.R tests/testthat/test-predict.R tests/testthat/test-randomForest.R tests/testthat/test-reAnalyse.R tests/testthat/test-removeMethods.R tests/testthat/test-roc.R tests/testthat/test-show.R tests/testthat/test-split.R tests/testthat/test-transformMethods.R tests/testthat/test-tune.R tests/testthat/test-univariate.R vignettes/metabolyseR.Rmd vignettes/modelling.Rmd vignettes/pre_treatment.Rmd vignettes/quick_start.Rmd