getSig: getSig
In jeffkimbrel/jakR: jakR Miscellaneous Scripts
getSig R Documentation
getSig
Description
Produces a df and plot of the significant taxa in a DESeq sigtab.
Usage
getSig(group = "group", s = sigtab, phylo = phyloTemp, minPlot = 1)
Arguments
group
A contrast field used to make the dds object
s
A sigtab object
phylo
A phyloseq object
minplot
minimum baseMean to show up in the plot.
jeffkimbrel/jakR documentation built on April 6, 2024, 8:48 p.m.
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| getSig | R Documentation |
getSig
Description
Produces a df and plot of the significant taxa in a DESeq sigtab.
Usage
getSig(group = "group", s = sigtab, phylo = phyloTemp, minPlot = 1)
Arguments
group |
A contrast field used to make the dds object |
s |
A sigtab object |
phylo |
A phyloseq object |
minplot |
minimum baseMean to show up in the plot. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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