plot_distances: Boxplot of Beta-diversity Distances

In jeffkimbrel/jakR: jakR Miscellaneous Scripts

Boxplot of Beta-diversity Distances

Description

Takes a 'phyloseq' object with samples grouped in the sample data, calculates all pairwise beta-diversity metrics, and plots the distances in facets. Now it returns a list where the df can be accessed with $df, and the plot can be accessed with $plot.

Usage

plot_distances(
  p = GlobalPatterns,
  m = "wunifrac",
  s = "X.SampleID",
  d = "SampleType"
)

Arguments

p	A phyloseq object
m	Distance metric
s	Column name with sample IDs
d	Grouping for comparisons

jeffkimbrel/jakR documentation built on April 6, 2024, 8:48 p.m.