permanova: Permanova (adonis) and visualization
In jeffkimbrel/jakR: jakR Miscellaneous Scripts
permanova R Documentation
Permanova (adonis) and visualization
Description
Permanova (adonis) and visualization
Usage
permanova(phyloObject, group = "TYPE", metric = "jsd", ordPoints = "none")
Arguments
phyloObject
A phyloseq object
group
A column name from the phyloseq object sample data to group samples for comparison
metric
The distance metric to use
ordPoints
X,Y points to use. If none given, then an NMDS will be run
palettePick
A palette object if you don't want to use the default
jeffkimbrel/jakR documentation built on April 6, 2024, 8:48 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| permanova | R Documentation |
Permanova (adonis) and visualization
Description
Permanova (adonis) and visualization
Usage
permanova(phyloObject, group = "TYPE", metric = "jsd", ordPoints = "none")
Arguments
phyloObject |
A phyloseq object |
group |
A column name from the phyloseq object sample data to group samples for comparison |
metric |
The distance metric to use |
ordPoints |
X,Y points to use. If none given, then an NMDS will be run |
palettePick |
A palette object if you don't want to use the default |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.