get_phylo_palette: getPhyloPalette

In jeffkimbrel/jakR: jakR Miscellaneous Scripts

getPhyloPalette

Description

getPhyloPalette

Usage

get_phylo_palette(
  p,
  n = 10,
  palette_high = colorbook$helpcenter,
  palette_low = colorbook$inslife,
  random_high = FALSE,
  random_low = FALSE,
  other_color = "#555555",
  OTU = F
)

Arguments

p	A Phyloseq object
n	Max number of taxa to be included in the "primary" palette, with the rest in a secondary, less dramatic palette
palette_high	Expanding color palette for the high taxa
palette_low	Expanding color palette for the low taxa
random_high	If TRUE, randomize the color palette. If FALSE, colors will be arranged from high to low taxa abundance
random_low	If TRUE, randomize the color palette. If FALSE, colors will be arranged from high to low taxa abundance
other_color	Color to use for the aggregated Other taxa

jeffkimbrel/jakR documentation built on April 6, 2024, 8:48 p.m.