get_alpha_diversity: Alpha-Diversity Measures
In jeffkimbrel/jakR: jakR Miscellaneous Scripts
get_alpha_diversity R Documentation
Alpha-Diversity Measures
Description
An extension of the phyloseq ‘estimate_richness' function to include Shannon’s
Evenness and sample depth. It also combines the normal estimate_richness output
with the sample data dataframe.
Usage
get_alpha_diversity(p, id_col = "SAMPLE")
Arguments
p
A phyloseq object
id_col
The name of the column with sample IDs
Details
The new version removes much of the phyloseq code, running them instead in Vegan or calculating manually.
jeffkimbrel/jakR documentation built on April 6, 2024, 8:48 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| get_alpha_diversity | R Documentation |
Alpha-Diversity Measures
Description
An extension of the phyloseq ‘estimate_richness' function to include Shannon’s Evenness and sample depth. It also combines the normal estimate_richness output with the sample data dataframe.
Usage
get_alpha_diversity(p, id_col = "SAMPLE")
Arguments
p |
A phyloseq object |
id_col |
The name of the column with sample IDs |
Details
The new version removes much of the phyloseq code, running them instead in Vegan or calculating manually.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.