pairwiseAdonis: Calculate Total and Pairwise Adonis Values
In jeffkimbrel/jakR: jakR Miscellaneous Scripts
View source: R/pairwiseAdonis.R
pairwiseAdonis R Documentation
Calculate Total and Pairwise Adonis Values
Description
Calculate Total and Pairwise Adonis Values
Usage
pairwiseAdonis(x, factors, sim.method = "bray", p.adjust.m = "BH", perm = 999)
Arguments
x
A dataframe of values with samples in columns, and observations in rows
factors
A dataframe with samples to be compared as rownames, and the groupings as column 1. It is easy to get this with a "select()" statement.
sim.method
The distance method
p.adjust.m
P-value adjustment method
perm
= Number of permutations
jeffkimbrel/jakR documentation built on April 6, 2024, 8:48 p.m.
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View source: R/pairwiseAdonis.R
| pairwiseAdonis | R Documentation |
Calculate Total and Pairwise Adonis Values
Description
Calculate Total and Pairwise Adonis Values
Usage
pairwiseAdonis(x, factors, sim.method = "bray", p.adjust.m = "BH", perm = 999)
Arguments
x |
A dataframe of values with samples in columns, and observations in rows |
factors |
A dataframe with samples to be compared as rownames, and the groupings as column 1. It is easy to get this with a "select()" statement. |
sim.method |
The distance method |
p.adjust.m |
P-value adjustment method |
perm |
= Number of permutations |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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