API for jhsiao999/ashbun
Methods and evaluation tools for single cell RNA-seq count data
| Global functions | |
|---|---|
| args.big_normal | Man page |
| args.bimodal | Man page |
| args.flat_top | Man page |
| args.near_normal | Man page |
| args.spiky | Man page |
| args.uni_natural | Man page |
| args.uni_natural_pm_zero | Man page |
| args.uni_natural_uni_zero | Man page |
| args.uni_zero | Man page |
| ashPoissonWrapper | Man page |
| dens_unimix | Man page |
| dens_unimix_sing | Man page |
| filter.Wrapper | Man page |
| filter.excludeAllZeros | Man page |
| filterFeatures.fractionExpressed | Man page |
| filterSamples.fractionExpressed | Man page |
| gene_variation | Man page |
| getAUC | Man page |
| getROC | Man page |
| getROC.average | Man page |
| getTPR | Man page |
| getTPR.pROC | Man page |
| makeSimCount2groups | Man page |
| makeSimCount2groups.filter | Man page |
| make_normalmix | Man page |
| methodWrapper.DESeq2 | Man page |
| methodWrapper.bpsc | Man page |
| methodWrapper.edgeR | Man page |
| methodWrapper.limmaVoom | Man page |
| methodWrapper.mast | Man page |
| methodWrapper.num_sv | Man page |
| methodWrapper.rots | Man page |
| methodWrapper.scde | Man page |
| methodWrapper.sva | Man page |
| negbin | Man page |
| negbin_hurdle | Man page |
| negbin_zif | Man page |
| non_null_sim | Man page |
| normalize.census | Man page |
| normalize.cpm | Man page |
| normalize.lib | Man page |
| normalize.rle | Man page |
| normalize.scnorm | Man page |
| normalize.scran | Man page |
| normalize.tmm | Man page |
| pois_thinning | Man page |
| query.evaluation | Man page |
| query.methodsMeanExpression | Man page |
| query.methodsNormalization | Man page |
| query.pipeline | Man page |
| sampleingene | Man page |
| simulationWrapper | Man page |
| simulationWrapper.filter | Man page |
| voom.controlPseudocount | Man page |
