methodWrapper.edgeR: edgeR

Description Usage Arguments Value Author(s)

Description

Implement edgeR.

Usage

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methodWrapper.edgeR(counts, condition, libsize_factors = NULL,
  control = list(save_modelFit = FALSE))

Arguments

counts

Gene by sample expression count matrix (G by N).

condition

Binary vector of length N indicating sample biological condition.

libsize_factors

Numeric vector of scale factors for library sizes. Default NULL computes libsize_factors using edgeR.

control

List with control arguments, including save_modelFit TRUE to output the complete DESeq2 fit results.

Value

List with the following objects betahat Estimate effect size of condition for all genes. pvalue P-values of the effect sizes. fit edgeR complete output of the model fit. NULL if save_modelFit = FALSE.

Author(s)

Chiaowen Joyce Hsiao


jhsiao999/ashbun documentation built on May 8, 2019, 11:17 p.m.