normalize.cpm: Counts per million

In jhsiao999/ashbun: Methods and evaluation tools for single cell RNA-seq count data

Description

Compute CPM using the scale factors for library sizes.

Usage

normalize.cpm(counts, libsize_factors = rep(1, dim(counts)[2]),
  control = list(NULL))

Arguments

counts	gene by sample expression count matrix (G by N).
libsize_factors	numreic vector of the scale factors for library sizes. Default to 1 - no adjustment.
control	List with control arguments, including

Value

cpm numeric matrix of counts per million.

jhsiao999/ashbun documentation built on May 8, 2019, 11:17 p.m.