Files in jhsiao999/ashbun
Methods and evaluation tools for single cell RNA-seq count data

.Rbuildignore
.gitignore
.gitignore~
.travis.yml
DESCRIPTION
NAMESPACE
R/ashPoissonDiagnostics.R R/ashPoissonModality.R R/evaluateMethods.R R/fit-various-dist-for-zeros.r R/methodsBenchmarks.R R/methodsConfoundingCorrection.R R/methodsMeanExpression-bulk.R R/methodsMeanExpression-singleCell.R R/methodsNormalize.Diagnostics.R R/methodsNormalize.R R/methodsPreprocess.R R/simulateExpression.R R/varianceComp-blmer.r README.Rmd README.md
ashbun.Rproj
inst/dsc/bun.dsc
inst/dsc/get_counts.R inst/dsc/mean.R inst/dsc/normalize.R inst/dsc/simulate.R
inst/testdata/HumanTungiPSC.rda
inst/testdata/testdata.R man/Implement.Rd man/args.big_normal.Rd man/args.bimodal.Rd man/args.flat_top.Rd man/args.near_normal.Rd man/args.spiky.Rd man/args.uni_natural.Rd man/args.uni_natural_pm_zero.Rd man/args.uni_natural_uni_zero.Rd man/args.uni_zero.Rd man/ashPoissonWrapper.Rd man/dens_unimix.Rd man/dens_unimix_sing.Rd man/filter.Wrapper.Rd man/filter.excludeAllZeros.Rd man/filterFeatures.fractionExpressed.Rd man/filterSamples.fractionExpressed.Rd man/gene_variation.Rd man/getAUC.Rd man/getROC.Rd man/getROC.average.Rd man/getTPR.Rd man/getTPR.pROC.Rd man/makeSimCount2groups.Rd man/makeSimCount2groups.filter.Rd man/make_normalmix.Rd man/methodWrapper.DESeq2.Rd man/methodWrapper.bpsc.Rd man/methodWrapper.edgeR.Rd man/methodWrapper.limmaVoom.Rd man/methodWrapper.num_sv.Rd man/methodWrapper.scde.Rd man/methodWrapper.sva.Rd man/negbin.Rd man/negbin_hurdle.Rd man/negbin_zif.Rd man/non_null_sim.Rd man/normalize.census.Rd man/normalize.cpm.Rd man/normalize.lib.Rd man/normalize.rle.Rd man/normalize.scnorm.Rd man/normalize.scran.Rd man/normalize.tmm.Rd man/pois_thinning.Rd man/query.evaluation.Rd man/query.methodsMeanExpression.Rd man/query.methodsNormalization.Rd man/query.pipeline.Rd man/sampleingene.Rd man/simulationWrapper.Rd man/simulationWrapper.filter.Rd man/voom.controlPseudocount.Rd tests/test-package.Rmd
tests/test-package.html
tests/tests.results.multiple.data.rds
tests/tests.results.one.data.rds
tests/testthat.R tests/testthat/common-methodsMeanExpression.R tests/testthat/common-methodsNormalize.R tests/testthat/test-methodsMeanExpression.R tests/testthat/test-methodsNormalize.R
jhsiao999/ashbun documentation built on Feb. 17, 2018, 4:25 a.m.