filterSamples.fractionExpressed: Filter samples by fraction of genes detected as expressed

In jhsiao999/ashbun: Methods and evaluation tools for single cell RNA-seq count data

Usage

filterSamples.fractionExpressed(counts, thresholdDetection = 1,
  fractionExpressed = 0.25, control = list(plot = FALSE))

Arguments

counts	Gene by sample expression count matrix (G by N).
thresholdDetection	minimum count (or tpm or cpm, depends on the data) required to qualified as "detected as expressed".
fractionExpressed	fraction of genes qualified as detected as expressed.
control	List with the following arguments plot TRUE/FALSE to output diagnositic plot.

Value

List of the following objects fraction_expressed fraction of genes qualified as "expressed". index_filter TRUE/FALSE passing the filter.

jhsiao999/ashbun documentation built on May 8, 2019, 11:17 p.m.