API for jhsiao999/ashbun
Methods and evaluation tools for single cell RNA-seq count data

Global functions
args.big_normal Man page Source code
args.bimodal Man page Source code
args.flat_top Man page Source code
args.near_normal Man page Source code
args.spiky Man page Source code
args.uni_natural Man page Source code
args.uni_natural_pm_zero Man page Source code
args.uni_natural_uni_zero Man page Source code
args.uni_zero Man page Source code
ashPoissonWrapper Man page Source code
dens_unimix Man page Source code
dens_unimix_sing Man page Source code
filter.Wrapper Man page Source code
filter.excludeAllZeros Man page Source code
filterFeatures.fractionExpressed Man page Source code
filterSamples.fractionExpressed Man page Source code
gene_variation Man page Source code
getAUC Man page Source code
getROC Man page Source code
getROC.average Man page Source code
getTPR Man page Source code
getTPR.pROC Man page Source code
makeSimCount2groups Man page Source code
makeSimCount2groups.filter Man page Source code
make_normalmix Man page Source code
methodWrapper.DESeq2 Man page Source code
methodWrapper.bpsc Man page Source code
methodWrapper.edgeR Man page Source code
methodWrapper.limmaVoom Man page Source code
methodWrapper.mast Man page Source code
methodWrapper.num_sv Man page Source code
methodWrapper.rots Man page Source code
methodWrapper.scde Man page Source code
methodWrapper.sva Man page Source code
negbin Man page Source code
negbin_hurdle Man page Source code
negbin_zif Man page Source code
non_null_sim Man page Source code
normalize.census Man page Source code
normalize.cpm Man page Source code
normalize.lib Man page Source code
normalize.rle Man page Source code
normalize.scnorm Man page Source code
normalize.scran Man page Source code
normalize.tmm Man page Source code
pois_thinning Man page Source code
query.evaluation Man page Source code
query.methodsMeanExpression Man page Source code
query.methodsNormalization Man page Source code
query.pipeline Man page Source code
sampleingene Man page Source code
simulationWrapper Man page Source code
simulationWrapper.filter Man page Source code
voom.controlPseudocount Man page Source code
jhsiao999/ashbun documentation built on Feb. 17, 2018, 4:25 a.m.