filter.Wrapper: Wrapper for all filtering steps

In jhsiao999/ashbun: Methods and evaluation tools for single cell RNA-seq count data

Usage

filter.Wrapper(counts, condition, thresholdDetection = 1,
  fractionExpressed = 0.01, is_nullgene = NULL)

Arguments

counts	Gene by sample expression count matrix (G by N).
thresholdDetection	minimum count per gene/sample. Default value = 1.
fractionExpressed	fraction of samples expressed (above thresholdDetection). Default value = .01.

Value

counts filtered count matrix.

jhsiao999/ashbun documentation built on May 8, 2019, 11:17 p.m.