normalize.census: census
In jhsiao999/ashbun: Methods and evaluation tools for single cell RNA-seq count data
Description
Usage
Arguments
Value
Description
census is implemented in Monocle.
Usage
1
normalize.census(counts, control = list(save_modelFit = FALSE))
Arguments
counts
Gene by sample expression count matrix (G by N). Has to be TPM or FPKM.
control
List with control arguments, including
save_modelFit TRUE to output the complete census output.
Value
List of the following objects
count_normed numeric matrix of normalized count matrix, or also know as true
abundance by monocle.
libsize_factors numeric matrix of scale factors for library sizes.
model_output monocle complete output.
jhsiao999/ashbun documentation built on May 8, 2019, 11:17 p.m.
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Description Usage Arguments Value
Description
census is implemented in Monocle.
Usage
1 | normalize.census(counts, control = list(save_modelFit = FALSE))
|
Arguments
counts |
Gene by sample expression count matrix (G by N). Has to be TPM or FPKM. |
control |
List with control arguments, including
|
Value
List of the following objects
count_normed numeric matrix of normalized count matrix, or also know as true
abundance by monocle.
libsize_factors numeric matrix of scale factors for library sizes.
model_output monocle complete output.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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