extract_expressed_TFs | R Documentation |
extract expressed transcription factors according to the proportion of cells that transcription factors express
extract_expressed_TFs(seurat_object, TFs, cells_quantile = 0.05)
seurat_object |
seurat object |
TFs |
character, indicating transcription factors names |
cells_quantile |
numeric, indicating proportion of cells that transcription factors express (threshold to get expressed transcription factors) |
load(system.file("extdata", "test_seurat.rda", package = "IReNA"))
TFs <- c('CLK1','TCEB3','SOX4')
extract_expressed_TFs(test_seurat,TFs)
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