extract_expressed_TFs: extract expressed transcription factors
In jiang-junyao/IReNA: IReNA
extract_expressed_TFs R Documentation
extract expressed transcription factors
Description
extract expressed transcription factors according to the proportion of cells that
transcription factors express
Usage
extract_expressed_TFs(seurat_object, TFs, cells_quantile = 0.05)
Arguments
seurat_object
seurat object
TFs
character, indicating transcription factors names
cells_quantile
numeric, indicating proportion of cells that
transcription factors express (threshold to get expressed transcription factors)
Examples
load(system.file("extdata", "test_seurat.rda", package = "IReNA"))
TFs <- c('CLK1','TCEB3','SOX4')
extract_expressed_TFs(test_seurat,TFs)
jiang-junyao/IReNA documentation built on May 2, 2024, 6:54 a.m.
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| extract_expressed_TFs | R Documentation |
extract expressed transcription factors
Description
extract expressed transcription factors according to the proportion of cells that transcription factors express
Usage
extract_expressed_TFs(seurat_object, TFs, cells_quantile = 0.05)
Arguments
seurat_object |
seurat object |
TFs |
character, indicating transcription factors names |
cells_quantile |
numeric, indicating proportion of cells that transcription factors express (threshold to get expressed transcription factors) |
Examples
load(system.file("extdata", "test_seurat.rda", package = "IReNA"))
TFs <- c('CLK1','TCEB3','SOX4')
extract_expressed_TFs(test_seurat,TFs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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