extract_expressed_TFs: extract expressed transcription factors

In jiang-junyao/IReNA: IReNA

extract expressed transcription factors

Description

extract expressed transcription factors according to the proportion of cells that transcription factors express

Usage

extract_expressed_TFs(seurat_object, TFs, cells_quantile = 0.05)

Arguments

seurat_object	seurat object
TFs	character, indicating transcription factors names
cells_quantile	numeric, indicating proportion of cells that transcription factors express (threshold to get expressed transcription factors)

Examples

load(system.file("extdata", "test_seurat.rda", package = "IReNA"))
TFs <- c('CLK1','TCEB3','SOX4')
extract_expressed_TFs(test_seurat,TFs)

jiang-junyao/IReNA documentation built on Nov. 15, 2024, 1:51 a.m.