generate_fimo_regulation: Generate regulation database accoding to the fimo result
In jiang-junyao/IReNA: IReNA
generate_fimo_regulation R Documentation
Generate regulation database accoding to the fimo result
Description
Generate regulation database accoding to the fimo result
Usage
generate_fimo_regulation(motif_dir, motif)
Arguments
motif_dir
character, indicating the path of fimo result
motif
motif file, you can choose our bulit-in motif database of
'mus musculus', 'homo sapiens', 'zebrafish' and 'chicken' by 'motif = Tranfac201803_Mm_MotifTFsF',
'motif = Tranfac201803_Hs_MotifTFsF', 'motif = Tranfac201803_Zf_MotifTFsF',
'motif = Tranfac201803_Ch_MotifTFsF' respectively, or you can upload your own
motif data base, but the formata use be the same as our built-in motif database.
jiang-junyao/IReNA documentation built on Nov. 15, 2024, 1:51 a.m.
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| generate_fimo_regulation | R Documentation |
Generate regulation database accoding to the fimo result
Description
Generate regulation database accoding to the fimo result
Usage
generate_fimo_regulation(motif_dir, motif)
Arguments
motif_dir |
character, indicating the path of fimo result |
motif |
motif file, you can choose our bulit-in motif database of 'mus musculus', 'homo sapiens', 'zebrafish' and 'chicken' by 'motif = Tranfac201803_Mm_MotifTFsF', 'motif = Tranfac201803_Hs_MotifTFsF', 'motif = Tranfac201803_Zf_MotifTFsF', 'motif = Tranfac201803_Ch_MotifTFsF' respectively, or you can upload your own motif data base, but the formata use be the same as our built-in motif database. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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