initiate_cy: initiating the cytoscape

In jiang-junyao/IReNA: IReNA

initiating the cytoscape

Description

Initiate Cytoscape to visualize regulatory network

Usage

initiate_cy(TFs_list, colour = NULL, type = "TF", layout1 = "degree-circle")

Arguments

TFs_list	TFs_list generated by network_analysis
colour	vector, indicating colors for border of each node
type	network type, 'TF' indicate TFs network, 'module' indicate intramodular network
layout1	the layout to display the network, options: "degree-circle", "attributes-layout", "kamada-kawai", "force-directed", "cose", "hierarchical", "attribute-circle", "stacked-node-layout", "circular", "grid"

Value

Cytoscape visualization

Examples

## Not run: 
initiate_cy(TFs_list, layout1='degree-circle', type='TF')
initiate_cy(TFs_list, layout1='grid', type='module')

## End(Not run)

jiang-junyao/IReNA documentation built on Nov. 4, 2024, 8:29 p.m.