sort_TFs_degree: Sort Transcription factor based on degree.

In jiang-junyao/IReNA: IReNA

Sort Transcription factor based on degree.

Description

Sort Transcription factor based on degree.

Usage

sort_TFs_degree(regulatory_relationships)

Arguments

regulatory_relationships

regulatory relationships , columns should contain 'TF', 'TFSymbol', 'TFGroup', 'Target', 'TargetSymbol', 'TargetGroup' and 'Correlation'

Value

Matrix contains sorted transcription factors

Examples

load(system.file("extdata", "test_clustering.rda", package = "IReNA"))
test_clustering=add_ENSID(test_clustering,Spec1 = 'Hs')
correlation <- get_cor(test_clustering, Tranfac201803_Hs_MotifTFsF, 0.7, start_column=3)
TFs_degree <- sort_TFs_degree(correlation)

jiang-junyao/IReNA documentation built on May 2, 2024, 6:54 a.m.