filter_expression_profile: filter expression profile

In jiang-junyao/IReNA: IReNA

filter expression profile

Description

remove empty columns and genes with low foldchange in expression profile

Usage

filter_expression_profile(expression_profile, filterfc = TRUE, FC = 0.1)

Arguments

expression_profile	expression profile, generated by get_SmoothByBin_PseudotimeExp
filterfc	logic, indicating whether you want to filter genes based on logFC
FC	numeric, indicating logFC threshold to filter genes

Value

return filtered expression profile

Examples

load(system.file("extdata", "test_clustering.rda", package = "IReNA"))
expression_profile = test_clustering[,-1]
filter_expression_profile(expression_profile)

jiang-junyao/IReNA documentation built on Nov. 4, 2024, 8:29 p.m.