get_tss_region: Get tss region sequence of target genes in regulaotry...
In jiang-junyao/IReNA: IReNA
get_tss_region R Documentation
Get tss region sequence of target genes in regulaotry relationships
Description
Get tss region sequence of target genes in regulaotry relationships
Usage
get_tss_region(gtf, gene.use, upstream_length = 1000, downstream_length = 500)
Arguments
gtf
Gene transfer format, you can download it from http://www.ensembl.org/info/data/ftp/index.html
gene.use
character, indicating target genes
upstream_length
numeric, indicating upstream region length of TSS
downstream_length
numeric, indicating downstream region length of TSS
Value
data.frame, contains four columns are target gene, chr, start and end.
jiang-junyao/IReNA documentation built on Nov. 4, 2024, 8:29 p.m.
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| get_tss_region | R Documentation |
Get tss region sequence of target genes in regulaotry relationships
Description
Get tss region sequence of target genes in regulaotry relationships
Usage
get_tss_region(gtf, gene.use, upstream_length = 1000, downstream_length = 500)
Arguments
gtf |
Gene transfer format, you can download it from http://www.ensembl.org/info/data/ftp/index.html |
gene.use |
character, indicating target genes |
upstream_length |
numeric, indicating upstream region length of TSS |
downstream_length |
numeric, indicating downstream region length of TSS |
Value
data.frame, contains four columns are target gene, chr, start and end.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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