Detect abnormal read coverage using a set of samples as references. From high-throughput sequencing, the genome is binned and read mapping to each bin are counted. From these read counts, PopSV test, in each bin, is the read counts are different between a sample of interest and a set of reference samples. Functions for pre/post-processing are also provided.
Package details |
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Author | Jean Monlong |
Maintainer | Jean Monlong <jean.monlong@mail.mcgill.ca> |
License | GPL-2 |
Version | 1.1 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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