qc.zshift.unaffected: QC: Z-score bias in unaffected samples

Description Usage Arguments Value Author(s)

View source: R/qc.zshift.unaffected.R

Description

Checks that the Z-scores of unaffected samples are centered in 0. When controls are not perfectly matched, the Z-scores of cases can be slightly shifted and produce false calls. This function computes a measure of such bias.

Usage

1
qc.zshift.unaffected(files.df, bins.df, nb.cores = 1)

Arguments

files.df

a data.frame with the path to relevant files for each samples.

bins.df

a data.frame with information on which bins to analyze.

nb.cores

the number of cores to use. Default is 1.

Value

a data.frame with a shift measure for each bin.

Author(s)

Jean Monlong


jmonlong/PopSV documentation built on Sept. 1, 2018, 12:04 p.m.