Description Usage Arguments Value Author(s)

Global median normalization of bin counts. After such normalization, each sample has the same median bin count.

1 |

`bc.df` |
a data.frame with 'chr', 'start', 'end' columns and then one column per sample with its bin counts. |

`nb.cores` |
the number of cores to use. Default is 1. |

`norm.stats.comp` |
Should some statistics on the normalized bin count be computed (mean, sd, outliers). Default is TRUE. |

a list with

`norm.stats` |
a data.frame witht some metrics about the normalization of each bin (row) : coverage average and standard deviation; number of outlier samples |

`bc.norm` |
a data.frame, similar to the input 'bc.df', with the normalized bin counts. |

Jean Monlong

jmonlong/PopSV documentation built on Sept. 1, 2018, 12:04 p.m.

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