jmonlong/PopSV: Population-based detection of structural variants from Read-Depth signal

Detect abnormal read coverage using a set of samples as references. From high-throughput sequencing, the genome is binned and read mapping to each bin are counted. From these read counts, PopSV test, in each bin, is the read counts are different between a sample of interest and a set of reference samples. Functions for pre/post-processing are also provided.

Getting started

Package details

AuthorJean Monlong
MaintainerJean Monlong <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jmonlong/PopSV documentation built on Dec. 9, 2018, 10:10 a.m.