find.comparable.bins: Find comparable bins between two sample cohort.

In jmonlong/PopSV: Population-based detection of structural variants from Read-Depth signal

Description

When two cohort have been run separately but the variants have to be compared, this function finds the bins in which both runs had comparable detection power. Or at least it removes most of the bins that are clearly not covered similarly in both runs. H

Usage

find.comparable.bins(msd1, msd2, plot = TRUE)

Arguments

msd1	a data.frame or path to the file with the normalization stats from the first run.
msd2	a data.frame or path to the file with the normalization stats from the second run.
plot	should a graph be displayed. Default is TRUE.

Details

If 'plot=TRUE' (Default), a graph is displayed. It compares the average coverage in both cohort and shows the thresholds used to filter out bins with different coverage.

Value

a data.frame with the bins to use for the comparison.

Author(s)

Jean Monlong

jmonlong/PopSV documentation built on Sept. 15, 2019, 9:29 p.m.