API for jmonlong/PopSV
Population-based detection of structural variants from Read-Depth signal

Global functions
PopSV-package Man page
aneuploidy.flag Man page Source code
bin.bam Man page Source code
bin.bam.2d Man page Source code
bin.bw Man page Source code
breakpoint.finder.interactive Man page Source code
call.abnormal.cov Man page Source code
chrplot Man page Source code
chunk.bin Man page Source code
cluster.regions Man page Source code
cn.plot Man page Source code
comp.index.files Man page Source code
correct.GC Man page Source code
coverage.plot Man page Source code
coverage.plot.raw Man page Source code
createEmptyDF Man page Source code
draw.controls Man page Source code
fdrtool.quantile Man page Source code
fdrtool.quantile.2N Man page Source code
filter.noncovered.bins Man page Source code
find.comparable.bins Man page Source code
fragment.genome Man page Source code
fragment.genome.hg19 Man page Source code
freq.range Man page Source code
gender.predict Man page Source code
getGC Man page Source code
getGC.hg19 Man page Source code
init.filenames Man page Source code
localMax Man page Source code
mean.sd.outlierR Man page Source code
med.norm Man page Source code
medvar.norm Man page Source code
medvar.norm.internal Man page Source code
mergeConsBin.cbs Man page Source code
mergeConsBin.reduce Man page Source code
mergeConsBin.simple Man page Source code
mergeConsBin.z Man page Source code
norm.tm.opt Man page Source code
norm.z.quantile Source code
normQC Man page Source code
pair.discordant.reads Man page Source code
pca.norm Man page Source code
qc.sample Man page Source code
qc.samples Man page Source code
qc.samples.cluster Man page Source code
qc.zshift.unaffected Man page Source code
quant.norm Man page Source code
quick.count Man page Source code
read.bedix Man page Source code
samples.merge Man page Source code
sv.summary Man page Source code
sv.summary.interactive Man page Source code
tmm.norm Man page Source code
tn.norm Man page Source code
tn.norm.qc Man page Source code
tn.norm.qc.div Man page Source code
tn.test.sample Man page Source code
tnK.norm Man page Source code
weight.ref.pca Man page Source code
winsor Man page Source code
write.split.samples Man page Source code
writeVcf Man page Source code
z.comp Man page Source code
z.norm Man page Source code
z.thres.cons.bins Man page Source code
jmonlong/PopSV documentation built on May 5, 2018, 6:37 p.m.