z.thres.cons.bins: Z-score thresholding using bin consecutiveness.

In jmonlong/PopSV: Population-based detection of structural variants from Read-Depth signal

Description

Find a threshold on the Z-scores associated with how many consecutive bins are found.

Usage

z.thres.cons.bins(z.df)

Arguments

z.df	a data.frame with at least 'chr', 'start', 'end' and 'z' columns.

Value

a list with:

dup.th	the threshold for positive Z-scores (duplication signal)
del.th	the threshold for negative Z-scores (deletion signal)
sigma.est.dup	the estimated null distribution variance for positive Z-scores
sigma.est.del	the estimated null distribution variance for negative Z-scores

Author(s)

Jean Monlong

jmonlong/PopSV documentation built on Sept. 15, 2019, 9:29 p.m.