Description Usage Arguments Value Author(s)

View source: R/mergeConsBin.cbs.R

Circular Binary Segmentation of the Z-scores. (NOT TESTED WELL YET)

1 2 | ```
mergeConsBin.cbs(df, pv.th = 0.01, stitch.dist = 10000,
max.gap.size = 1e+05)
``` |

`df` |
a data.frame with at least 'chr', 'start' and 'end' columns. |

`pv.th` |
the P-value threshold used for the segmentation and the segment filtering. Default is 0.01. |

`stitch.dist` |
the stitching distance, i.e. the maximum distance at which two bins will be merged. |

`max.gap.size` |
the maximum gap between bins allowed. Default is 100 kb. Calls will not span gap larger than this (e.g. centromere). |

a data.frame, similar to the input but with merged rows.

Jean Monlong

jmonlong/PopSV documentation built on Sept. 1, 2018, 12:04 p.m.

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