getGC: GC content computation for specific bins
In jmonlong/PopSV: Population-based detection of structural variants from Read-Depth signal
Description
Usage
Arguments
Value
Author(s)
Description
Add a column with GC content to a data.frame with 'chr', 'start' and 'end' column.
Requires BSgenome for Hsapiens hg19; if not instructions to install it will
be displayed.
Usage
1
2
getGC(bins.df,
genome = BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19)
Arguments
bins.df
a data.frame with bin information. Columns 'chr', 'start' and 'end'
are required.
genome
the BSgenome object with the genome. Usually BSgenome.Hsapiens.UCSC.hg19 or BSgenome.Hsapiens.UCSC.hg38.
Value
the same input data.frame with an extra column 'GCcontent'.
Author(s)
Jean Monlong
jmonlong/PopSV documentation built on Sept. 15, 2019, 9:29 p.m.
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Description Usage Arguments Value Author(s)
Description
Add a column with GC content to a data.frame with 'chr', 'start' and 'end' column. Requires BSgenome for Hsapiens hg19; if not instructions to install it will be displayed.
Usage
1 2 | getGC(bins.df,
genome = BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19)
|
Arguments
bins.df |
a data.frame with bin information. Columns 'chr', 'start' and 'end' are required. |
genome |
the BSgenome object with the genome. Usually BSgenome.Hsapiens.UCSC.hg19 or BSgenome.Hsapiens.UCSC.hg38. |
Value
the same input data.frame with an extra column 'GCcontent'.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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