Description Usage Arguments Value Author(s)
Add a column with GC content to a data.frame with 'chr', 'start' and 'end' column. Requires BSgenome for Hsapiens hg19; if not instructions to install it will be displayed.
1 2 | getGC(bins.df,
genome = BSgenome.Hsapiens.UCSC.hg19::BSgenome.Hsapiens.UCSC.hg19)
|
bins.df |
a data.frame with bin information. Columns 'chr', 'start' and 'end' are required. |
genome |
the BSgenome object with the genome. Usually BSgenome.Hsapiens.UCSC.hg19 or BSgenome.Hsapiens.UCSC.hg38. |
the same input data.frame with an extra column 'GCcontent'.
Jean Monlong
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