write.split.samples: Split and write results in one file per sample

In jmonlong/PopSV: Population-based detection of structural variants from Read-Depth signal

Description

Split join results into one file per sample per feature. For example to split and write the Z-scores of reference samples after joined computation.

Usage

write.split.samples(res, files.df, samples = NULL, files.col = c("z", "fc"),
  compress.index = TRUE, nb.cores = 1, append = FALSE, reorder = FALSE)

Arguments

res	a list with the results to split/write.
files.df	a data.frame with information about each output file.
samples	the names of the samples to use.
files.col	the name of 'files.df' column to use for each 'res' element.
compress.index	should the output be compressed and indexed. Default is TRUE.
nb.cores	the number of computing cores to use. Default is 1.
append	should the results be appended at the end of existing files. Default is FALSE.
reorder	If 'compress.index=TRUE', should the files be reordered before compression/indexing. Default is FALSE.

Value

'Done' if everything worked fine.

Author(s)

Jean Monlong

jmonlong/PopSV documentation built on Sept. 15, 2019, 9:29 p.m.