sv.summary.interactive: Interactive summary of the calls

Description Usage Arguments Details Value Author(s)

View source: R/sv.summary.interactive.R

Description

Interactive summary of the individual bins with abnormal coverage as detected by 'call.abnomal.cov'.

Usage

1
sv.summary.interactive(res.df, height = "500px")

Arguments

res.df

the data.frame with the results.

height

the height of the plot in the webpage. Default is "500px".

Details

A number of simple metrics are displayed, to get an idea of the quality of the calls. For normal samples we would expect: the amount of called genome in each sample to be somewhat similar; the copy number estimates to locate near integer values; No systematic calls (i.e. called in all samples). The different tabs of the application display related metrics. The use can interactively tweak a number of filtering parameter to get a subset of high-quality calls. These filtering parameters are

Value

a shiny app in the web browser. When the 'Export' button is pressed, the resulting data.frame is returned.

Author(s)

Jean Monlong


jmonlong/PopSV documentation built on Oct. 20, 2017, 12:58 a.m.