Description Usage Arguments Value Author(s)
Following targeted normalization, some Quality Control graphs are produced to see if some bins were problematic. Several graphs will be created. First the distribution of each normalization statistic: correlation distance with the last supporting bin; average normalized coverage; number of outlier samples removed. Then pairwise comparison of these metrics are displayed.
1 | tn.norm.qc(norm.stats, out.pdf = "normStats-QC.pdf", bin.size = FALSE)
|
norm.stats |
the name of the file with the normalization statistics ('norm.stats' in 'tn.norm' function) or directly a 'norm.stats' data.frame. |
out.pdf |
the name of the PDF file to create. |
bin.size |
Should the metrics be compared to the bin size. Default is FALSE. Useful if the bins are not of equal size. |
the name of the created PDF file.
Jean Monlong
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