tn.norm.qc: QC graphs for Targeted Normalization
In jmonlong/PopSV: Population-based detection of structural variants from Read-Depth signal
Description
Usage
Arguments
Value
Author(s)
Description
Following targeted normalization, some Quality Control graphs are produced to see if some bins were problematic. Several graphs will be created. First the distribution of each normalization statistic: correlation distance with the last supporting bin; average normalized coverage; number of outlier samples removed. Then pairwise comparison of these metrics are displayed.
Usage
1
tn.norm.qc(norm.stats, out.pdf = "normStats-QC.pdf", bin.size = FALSE)
Arguments
norm.stats
the name of the file with the normalization statistics ('norm.stats' in 'tn.norm' function) or directly a 'norm.stats' data.frame.
out.pdf
the name of the PDF file to create.
bin.size
Should the metrics be compared to the bin size. Default is FALSE. Useful if the bins are not of equal size.
Value
the name of the created PDF file.
Author(s)
Jean Monlong
jmonlong/PopSV documentation built on Sept. 15, 2019, 9:29 p.m.
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Description Usage Arguments Value Author(s)
Description
Following targeted normalization, some Quality Control graphs are produced to see if some bins were problematic. Several graphs will be created. First the distribution of each normalization statistic: correlation distance with the last supporting bin; average normalized coverage; number of outlier samples removed. Then pairwise comparison of these metrics are displayed.
Usage
1 | tn.norm.qc(norm.stats, out.pdf = "normStats-QC.pdf", bin.size = FALSE)
|
Arguments
norm.stats |
the name of the file with the normalization statistics ('norm.stats' in 'tn.norm' function) or directly a 'norm.stats' data.frame. |
out.pdf |
the name of the PDF file to create. |
bin.size |
Should the metrics be compared to the bin size. Default is FALSE. Useful if the bins are not of equal size. |
Value
the name of the created PDF file.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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