evalOl: Compute FP, FN, TP
In jmonlong/sveval: SV evaluation
evalOl R Documentation
Compute FP, FN, TP
Description
Compute FP, FN, TP
Usage
evalOl(ol.gr, truth.gr, calls.gr)
Arguments
ol.gr
an GRanges with overlap information and filtered/annotated by annotateOl
truth.gr
the original SVs from the truthset. Correspond to the queryHits in ol.gr. Use
only variants with 'pass' column.
calls.gr
the original SVs from the callset. Correspond to the subjectHits in ol.gr. Use
only variants with 'pass' column.
Value
a list with
eval
a data.frame with FP, FN and TP for each SV type.
regions
a list of FN/FP/TP regions for each SV type
Author(s)
Jean Monlong
jmonlong/sveval documentation built on July 31, 2023, 7:50 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| evalOl | R Documentation |
Compute FP, FN, TP
Description
Compute FP, FN, TP
Usage
evalOl(ol.gr, truth.gr, calls.gr)
Arguments
ol.gr |
an GRanges with overlap information and filtered/annotated by |
truth.gr |
the original SVs from the truthset. Correspond to the queryHits in ol.gr. Use only variants with 'pass' column. |
calls.gr |
the original SVs from the callset. Correspond to the subjectHits in ol.gr. Use only variants with 'pass' column. |
Value
a list with
eval |
a data.frame with FP, FN and TP for each SV type. |
regions |
a list of FN/FP/TP regions for each SV type |
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.