stitchSVs: Stitch fragmented SVs
In jmonlong/sveval: SV evaluation
stitchSVs R Documentation
Stitch fragmented SVs
Description
Stitch together SVs that are close together. This should be done for SVs of the same
type and genotype. When several SV pairs can be stitched in a cluster, only the best
pair (closest to each other) is merged, hence this could be run several times (e.g. until the
size of the output is similar to the input's).
Usage
stitchSVs(svs, stitch.dist = 20)
Arguments
svs
GRanges with SV information
stitch.dist
the maximum distance allowed for two SVs to be stitched.
Value
an upated GRanges.
Author(s)
Jean Monlong
jmonlong/sveval documentation built on July 31, 2023, 7:50 p.m.
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| stitchSVs | R Documentation |
Stitch fragmented SVs
Description
Stitch together SVs that are close together. This should be done for SVs of the same type and genotype. When several SV pairs can be stitched in a cluster, only the best pair (closest to each other) is merged, hence this could be run several times (e.g. until the size of the output is similar to the input's).
Usage
stitchSVs(svs, stitch.dist = 20)
Arguments
svs |
GRanges with SV information |
stitch.dist |
the maximum distance allowed for two SVs to be stitched. |
Value
an upated GRanges.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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