merge_ac_svsites_cpp: Count alleles in SV sites across samples

In jmonlong/sveval: SV evaluation

Count alleles in SV sites across samples

Description

Count allele at the SV site level. This function will use variant ids created by read_vcf_multisamps_cpp

Usage

merge_ac_svsites_cpp(filename, use_gz, sv_sites)

Arguments

filename	the path to the VCF file (unzipped or gzipped).
use_gz	is the VCF file gzipped?
sv_sites	a list defining the variant ID for each sv site (element).

Value

matrix with allele counts for each sv site (rows) and sample (columns)

Author(s)

Jean Monlong

jmonlong/sveval documentation built on July 31, 2023, 7:50 p.m.