explore_eval_svs: Interactive exploration of FP/FN/TP SVs

In jmonlong/sveval: SV evaluation

Interactive exploration of FP/FN/TP SVs

Description

Opens a Shiny app with a dynamic table that contains FP, FN and TP SVs. Clicking on a SV (row in the table) generates a simplified representation of the variants in the region. Useful to explore the calls, the truth and what was called TP/FN/FP.

Usage

explore_eval_svs(
  eval.o,
  ucsc.genome = "hg38",
  graph.height = 400,
  eval.o.2 = NULL,
  run.names = c("run1", "run2")
)

Arguments

eval.o	output from svevalOl.R
ucsc.genome	the genome version for the UCSC Genome Browser automated link.
graph.height	height of the graph in the shiny app, in pixel. Default is 400
eval.o.2	(optional) output from another run. If provided the graph will show a second panel for this run (change names with run.names=.
run.names	names to use for the panels when a second input, gr.l.2, is provided. Vector of two characters.

Value

Starts a Shiny app in a web browser.

Author(s)

Jean Monlong

jmonlong/sveval documentation built on July 31, 2023, 7:50 p.m.