subset_eval: Compute evaluation results on a subset of the calls
In jmonlong/sveval: SV evaluation

subset_eval

R Documentation

Compute evaluation results on a subset of the calls

Compute evaluation results on a subset of the calls

subset_eval(
  eval,
  regions.gr = NULL,
  accepted.filters = NULL,
  min.region.ol = 0.5,
  nb.cores = 1
)

`eval`	the output of `svevalOl`.
`regions.gr`	GRanges object with regions of interest. NULL (default) means all SVs.
`accepted.filters`	vector of the values of the FILTER field to keep. If NULL (default), all values are accepted which means all values are kept
`min.region.ol`	minimum proportion of variant that must overlap regions.gr. Default is 0.5
`nb.cores`	number of processors to use. Default is 1.